IPM Positions

Senior Post-Doctoral Research Fellow, School of Biological Sciences (2010 - Present )

Related Papers

1.	A. Yaghoobi and S.A. Malekpour Unraveling the genetic architecture of blood unfolded p-53 among non-demented elderlies: novel candidate genes for early Alzheimer's disease BMC Genomics 25 (2024),   [abstract]

2.	S.A. Malekpour, L. Haghverdi and M. Sadeghi Single-cell multi-omics analysis identifies context-specific gene regulatory gates and mechanisms Briefings in Bioinformatics (2024),   [abstract]

3.	S.A.. Malekpour, M. Shahdoust, R. Aghdam and M. Sadeghi wpLogicNet: logic gate and structure inference in gene regulatory networks Bioinformatics (2023),   [abstract]

4.	S. A. Malekpour, A. R. Alizad-Rahvar and M. Sadeghi LogicNet: probabilistic continuous logics in reconstructing gene regulatory networks BMC Bioinformatics 21 (2020), 1-21  [abstract]

5.	C. Razavi Pashabayg, N. Momenifar, S. A. Malekpour, M. Sadeghi, A. Rahimi Foroushani, H. Rafatpanah, N. Valizadeh, F. Sabet, S. M. Jazayeri, H. Keyvani, S. A. Rezaee and M. Norouzi Phylogenetic and phylodynamic study of Human T-cell lymphotropic virus Type 1 (HTLV-1) in Iran Infection, Genetics and Evolution (Accepted) [abstract]

6.	S. A. Malekpour, P. Pakzad, M. H. Foroughmand-Araabi, S. Goliaei, R. Tusserkani, B. Goliaei and M. Sadeghi Modeling the probability distribution of the bacterial burst size via a game-theoretic approach Journal of bioinformatics and computational biology 16 (2018), https://doi.org/10.1142/S0219720018500129  [abstract]

7.	A. Malekpour, H. Pezeshk and M. Sadeghi MSeq-CNV: accurate detection of Copy Number Variation from Sequencing of Multiple samples Scientific Reports 8 (2018), doi:10.1038/s41598-018-22323-8  [abstract]

8.

H. Mozhgani, A. Malekpour, M. Norouzi, F. Ramezani, A. Rezaee, V. Poortahmasebi, M. Sadeghi, M. Alavian, M. Zarei-Ghobadi, A. Ghaziasadi, H. Karimzadeh, R. Malekzadeh, M. Ziaee, F. Abedi, B. Ataei, M. Yaran, B. Sayad, H. Jahantigh, M. Somi, Gh. Sarizadeh, I. Sanei-Moghaddam, F. Mansour-Ghanaei, H. Keyvani, E. Kalantari, Z. Fakhari, B. Geravand and M. Jazayeri Molecular evolution and phylodynamics of hepatitis B virus infection circulating in Iran Archive of Virology (2018), 1-10  [abstract]

9.	M. Sadeghi, H. Pezeshk, R. Tusserkani, A. Sharifi Zarchi, S.A. Malekpour-Nargesi, Mehdi. Foroughmand, S. Goliaei, M. Totonchi and N. Ansari-Pour The Role and Importance of Genome Sequencing in Prediction of Cancer Risk Bioengineering and Pharmaceutical Engineering 11 (2017), 455-460  [abstract]

10.	A. Malekpour, H. Pezeshk and M. Sadeghi PSE-HMM: genome-wide CNV detection from NGS data using an HMM with Position-Specific Emission probabilities BMC Bioinformatics https://doi.org/10.1186/s12859-016-1296-y (2016), 1-30  [abstract]

11.	S. A. Malekpour, H. Pezeshk and M. Sadeghi MGP-HMM: detecting genome-wide CNVs using an HMM for modeling mate pair insertion sizes and read counts Mathematical Biosciences (2016), 53-62  [abstract]

12.	R. Aghdam. , H. Pezeshk. , S.A. Malekpour. , S. Shemehsavar. , M. Sadeghi. and C. Eslahchi. A Clustering Approach for Estimating Parameters of a Profle Hidden Markov Model International Journal of Data Mining and Bioinformatics 8 (2012), 66-82  [abstract]

13.	H. Pezeshk. , S. Naghizadeh. , S. A. Malekpour. , C. Eslahchi. and M. Sadeghi. A Modified Bidirectional Hidden Markov Model And Its Application In Protein Secondary Structure Prediction Proceeding of the Second International Conference on Advanced Computer Control 3 (2010), 535-538  [abstract]

14.	R. Aghdam. , H. Pezeshk. , S.A. Malekpour. , S. Shemehsavar. , M. Sadeghi. and C. Eslahchi. A Bidirectional Bayesian Monte Carlo Approach For Estimating Parameters Of A Profile Hidden Markov Model Applied Science Segment 1 (2010),   [abstract]

15.	S. A. Malekpour. , S. Naghizadeh . , H. Pezeshk. , M. Sadeghi. and C. Eslahchi. Protein secondary structure prediction using three neural networks and a segmental semi Markov model Mathematical Biosciences 217 (2009), 145-150  [abstract]

16.	S. A. Malekpour. , S. Naghizadeh. , H. Pezeshk. , M. Sadeghi. and C. Eslahchi. A Segmental Semi Markov Model For Protein Secondary Structure Prediction Mathematical Biosciences 221 (2009), 130-135  [abstract]