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Paper   IPM / Computer Science / 10949
School of Computer Science
  Title:   A Trusty Knowledge-Based Potential Energy Based on Pairwise Residue Contact Area
  Author(s): 
1.  S. Shahriar Arab
2.  M. Sadeghi
3.  C. Eslahchi
4.  H. Pezeshk
  Status:   In Proceedings
  Proceeding: ECCB
  Year:  2008
  Supported by:  IPM
  Abstract:
We develop a new approach to calculate a knowledge-based mean-force based on pairwise residue contact area. To test its effectiveness, we elaborate it on several decoy sets to measure its ability to discriminate native structure from decoys. In all cases this potential has been able to distinguish native structures from the decoys with about 100

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